Feel free to post your favorite clustering tool.
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One of my favorites is the MEV micro-array data analysis tool. It is simple to use and it has a very large number of features. Works well for any type of data. You can also load into it data from a file that is in a simple text format: GENE1, value1, value2 GENE2, value1, value2 Feel free to post your favorite clustering tool. |
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I would recommend a combination of cluster and treeview. pretty powerful! |
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Possibly related: http://mmc.gnets.ncsu.edu/ |
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One thing you might look at is the Broad Institute's genepattern software. It can be clunky at times but it will do most common tasks in a fairly straightforward fashion. |
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I am currently using Cluster 3.0 for clustering and TreeView. |
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