Tagged Questions

3
votes
7answers
157 views

What methods do you use for short read mapping?

When it comes to short read mapping there seemingly is no shortage of methods or software to choose from. Yet in practice we found that some published methods did now work at all, …
1
vote
2answers
24 views

How to set SHRiMP parameters for best sensitivity with 35bp colorspace data?

Hi, I have 35bp Solid colorspace sequencing data, and the actual sequences to be mapped are 20-25bp after removing the linker sequence. I hope to find all the hits allowing no mo …