Tagged Questions

2
votes
2answers
42 views

How to do quality trimming of SoLid Reads in colour space?

The reads returned from the Solid sequencing provider are littered with dots and some bases have a negative quality value. Does anyone know if there is a good method to extract hig …
4
votes
3answers
57 views

How do I map, align, and plot my SOLiD results?

Hi, I recently performed an RNA immunoprecipitation followed by SOLiD sequencing (50 bp fragmented reads). I haven't received my first SOLiD sequencing results yet, but I was told …
1
vote
3answers
51 views

CHIP DNA deep sequence

Hi, everyone, I am posting this question for my friend. He is analyzing his CHIP DNA solid deep sequence data, and find out that near 80% reads can not be mapped to the human genom …